STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86706.1Homologs of previously reported genes of unknown function. (506 aa)    
Predicted Functional Partners:
CCH86707.1
Amino acid permease; Function of strongly homologous gene; transporter.
 
   
 0.646
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  
 0.606
katA-2
Catalase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the catalase family.
   
  
 0.606
CCH90893.1
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 
 0.552
CCH86708.1
K+ transport system, NAD-binding component; Function of strongly homologous gene; transporter.
     
 0.541
CCH89484.1
Homologs of previously reported genes of unknown function.
  
 
 0.540
CCH89000.1
Phosphoesterase, PA-phosphatase related; Function of strongly homologous gene; enzyme.
  
     0.525
pgm
Phosphomannomutase/phosphoglucomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.507
CCH87711.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
     0.494
CCH88085.1
Putative glycosidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.432
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.