Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
kdpETwo-component system, OmpR family, KDP operon response regulator KdpE; Function of homologous gene experimentally demonstrated in an other organism; regulator. (221 aa)    
Predicted Functional Partners:
kdpD
Sensor protein kdpD; Function of strongly homologous gene; enzyme.
 0.980
phoR-2
Two-component Pi level signal transduction regulator, system with PhoB; Function of strongly homologous gene; enzyme.
 0.888
CCH90481.1
Sensor protein; Function of strongly homologous gene; enzyme.
 
 0.879
phoR
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 0.867
CCH90443.1
Sensor protein; Function of strongly homologous gene; enzyme.
 
 0.838
mtrB
Two component sensor histidine kinase mtrB; Function of strongly homologous gene; enzyme.
 0.822
cheY-2
Chemotaxis protein cheY; Function of strongly homologous gene; regulator.
 
 0.786
CCH89435.1
Two-component sensor histidine kinase; Function of strongly homologous gene; enzyme.
  
 0.722
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.697
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.695
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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