STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86740.1Transcriptional regulator RamA, AraC family; Function of strongly homologous gene; regulator. (144 aa)    
Predicted Functional Partners:
CCH86741.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Function of strongly homologous gene; cell process.
 
     0.938
CCH86374.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Function of strongly homologous gene; enzyme.
 
    0.801
CCH86590.1
Transcriptional regulator, AraC family; Function of strongly homologous gene; regulator.
  
     0.653
kdpD
Sensor protein kdpD; Function of strongly homologous gene; enzyme.
     
 0.565
CCH88982.1
Transcriptional regulator, AraC family; Function of strongly homologous gene; regulator.
  
     0.564
kdpE
Two-component system, OmpR family, KDP operon response regulator KdpE; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
  
 0.551
hemK
Methyltransferase HemK; Function of strongly homologous gene; enzyme.
 
      0.403
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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