STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86764.1Exported protein of unknown function; No homology to any previously reported sequences. (501 aa)    
Predicted Functional Partners:
CCH89723.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.770
CCH85892.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.748
CCH85542.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.643
CCH90380.1
Putative Predicted protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.638
CCH86765.1
Protein of unknown function; No homology to any previously reported sequences.
       0.584
CCH86766.1
Glycosyl transferase family 2 (modular protein); Function of strongly homologous gene; enzyme.
       0.584
rplX
50S ribosomal subunit protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
     0.582
rplT
50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
     0.505
mraW
S-adenosyl-dependent methyl transferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
     0.503
CCH85548.1
Homologs of previously reported genes of unknown function.
  
     0.488
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.