Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdnIFormate dehydrogenase gamma subunit; Function of strongly homologous gene; enzyme. (215 aa)    
Predicted Functional Partners:
fdhA2
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.984
fdhB
Formate dehydrogenase, beta subunit; Function of strongly homologous gene; enzyme.
  
 0.983
CCH86771.1
Oxidoreductase molybdopterin binding; Function of strongly homologous gene; enzyme.
 
  
  0.953
nasC
Assimilatory nitrate reductase catalytic subunit; Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.923
CCH86769.1
Putative homoserine O-acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the AB hydrolase superfamily. MetX family.
       0.768
ppc
Phosphoenolpyruvate carboxylase, Carbon dioxide fixing enzyme; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
     
 0.760
CCH85681.1
NAD-dependent malic enzyme; Function of strongly homologous gene; enzyme.
   
 
  0.747
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
     
  0.741
fmdA-2
Formamidase (formamide amidohydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.741
adhfe
Alcohol dehydrogenase, iron-type; Function of strongly homologous gene; enzyme.
     
  0.738
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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