STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86774.1Homologs of previously reported genes of unknown function. (933 aa)    
Predicted Functional Partners:
CCH86854.1
Homologs of previously reported genes of unknown function.
  
     0.656
CCH88837.1
Membrane metallopeptidase; Function of strongly homologous gene; enzyme.
  
     0.617
CCH87584.1
Homologs of previously reported genes of unknown function.
  
   
 0.527
CCH89612.1
Endonuclease/exonuclease/phosphatase; Function of strongly homologous gene; enzyme.
 
 
 0.508
CCH89186.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.496
CCH87773.1
RNA polymerase sigma factor, sigma-70 family (fragment); Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.480
CCH86773.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
    0.446
CCH87770.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component; Function of strongly homologous gene; transporter.
  
     0.427
CCH87772.1
Homologs of previously reported genes of unknown function.
  
     0.414
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.