STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86776.1Type II secretion system F domain protein; Function of strongly homologous gene; cell process. (313 aa)    
Predicted Functional Partners:
CCH86775.1
Flp pilus assembly protein TadC; Function of homologous gene experimentally demonstrated in an other organism; cell process.
 
 
 0.994
flpE
Pilus assembly protein ATPase; Function of strongly homologous gene; cell process.
 
 
 0.993
CCH86779.1
Homologs of previously reported genes of unknown function.
 
 
 0.991
flpF
Pilus assembly protein, ATPase; Function of strongly homologous gene; cell process.
 
 
 0.978
CCH86666.1
Type II secretion system F protein; Function of strongly homologous gene; cell process.
 
  
  0.923
tadE
Pilus assembly protein; Function of strongly homologous gene; cell process.
 
  
 0.918
CCH86132.1
Putative conjugal transfer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
 
 
 0.907
CCH86664.1
Type II secretion system protein E; Function of strongly homologous gene; cell process.
 
 
 0.906
CCH87117.1
Flp pilus assembly protein, ATPase CpaF; Function of strongly homologous gene; cell process.
 
 
 0.906
MODMU_3134
Fragment of putative Flp pilus assembly protein TadB (part 1); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 
 
 0.906
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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