STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86788.1NADH:flavin oxidoreductase/NADH oxidase; Function of strongly homologous gene; enzyme. (414 aa)    
Predicted Functional Partners:
CCH87853.1
Succinate dehydrogenase; Function of strongly homologous gene; enzyme.
    
 0.637
CCH86211.1
Transcriptional regulator, CarD family; Function of strongly homologous gene; regulator.
   
    0.584
etfB
Electron transfer flavoprotein subunit beta; Function of strongly homologous gene; carrier.
  
 
 0.555
tufB
Elongation factor Tu (EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.533
rpsA
30S ribosomal protein S1; Function of homologous gene experimentally demonstrated in an other organism; structure.
   
    0.476
CCH86789.1
Drug resistance protein; Function of strongly homologous gene; transporter; Belongs to the major facilitator superfamily.
  
    0.468
CCH86786.1
Anti-sigma regulatory factor, serine/threonine protein kinase; Function of strongly homologous gene; regulator.
       0.450
CCH86787.1
Putative PAS/PAC sensor protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
       0.450
cspA
Cold shock protein, DNA binding; Function of homologous gene experimentally demonstrated in an other organism; factor.
   
    0.407
cspA-2
Cold shock protein, DNA binding; Function of homologous gene experimentally demonstrated in an other organism; factor.
   
    0.407
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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