STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86878.1Bacteriophytochrome heme oxygenase; Function of strongly homologous gene; carrier. (209 aa)    
Predicted Functional Partners:
bfrB
Bacterioferritin bfrB; Iron-storage protein.
     
  0.900
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
  0.900
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
     
  0.900
CCH86877.1
Bacteriophytochrome (Light-regulated signal transduction histidine kinase); Function of strongly homologous gene; enzyme.
 
   
 0.864
CCH89894.1
Homologs of previously reported genes of unknown function.
  
     0.674
CCH86232.1
Putative HAD hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.602
CCH86879.1
Transcriptional regulator, PucR family; Function of strongly homologous gene; regulator.
       0.596
CCH86537.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.577
CCH88850.1
CAAX amino terminal protease; Function of strongly homologous gene; enzyme.
  
     0.558
pgsA
Phosphatidylglycerophosphate synthase; Function of strongly homologous gene; enzyme.
  
     0.540
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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