STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86886.1Homologs of previously reported genes of unknown function. (240 aa)    
Predicted Functional Partners:
CCH87473.1
Homologs of previously reported genes of unknown function.
 
     0.779
CCH89389.1
Homologs of previously reported genes of unknown function.
 
     0.737
CCH88506.1
Homologs of previously reported genes of unknown function.
 
     0.716
CCH88672.1
Homologs of previously reported genes of unknown function.
 
     0.713
CCH89101.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.676
caiD-2
Carnitinyl-CoA dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.671
CCH86884.1
Homologs of previously reported genes of unknown function.
       0.649
CCH89622.1
Homologs of previously reported genes of unknown function.
  
     0.596
CCH85820.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
  
     0.538
CCH90031.1
Homologs of previously reported genes of unknown function.
  
     0.515
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.