STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86889.1Transcriptional regulator, MarR-family; Function of strongly homologous gene; regulator. (173 aa)    
Predicted Functional Partners:
CCH86890.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.732
CCH86888.1
Homologs of previously reported genes of unknown function.
       0.561
CCH85684.1
Homologs of previously reported genes of unknown function.
  
     0.427
CCH90831.1
Putative transcriptional regulator involved in molybdate uptake; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.426
CCH89442.1
Homologs of previously reported genes of unknown function.
  
     0.420
CCH89148.1
Homologs of previously reported genes of unknown function.
  
     0.411
CCH89026.1
Cytochrome oxidase assembly protein; Function of strongly homologous gene; cell process.
  
     0.410
CCH86779.1
Homologs of previously reported genes of unknown function.
  
    0.408
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.