STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86906.1Homologs of previously reported genes of unknown function. (149 aa)    
Predicted Functional Partners:
CCH86905.1
Homologs of previously reported genes of unknown function.
       0.645
rbsC
ABC transporter, Membrane component (putative high-affinity D-ribose transport protein); Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.490
rbsA
ABC transporter, ATP binding subunit (putative high-affinity D-ribose transport); Function of strongly homologous gene; transporter.
       0.490
rbsB
ABC transporter; Function of strongly homologous gene; transporter.
       0.445
CCH88305.1
Homologs of previously reported genes of unknown function.
 
     0.433
CCH87769.1
Homologs of previously reported genes of unknown function.
  
     0.407
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.