STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amsAmylosucrase; Function of strongly homologous gene; enzyme. (659 aa)    
Predicted Functional Partners:
CCH89898.1
Putative trehalose biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 0.933
CCH86913.1
Polyhydroxyalkanoate depolymerase, intracellular; Function of strongly homologous gene; enzyme.
     
 0.600
glgX-2
Glycosyl hydrolase (glycogen debranching enzyme); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.599
glgX
Glycosyl hydrolase (glycogen debranching enzyme); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.595
glgP
Glycogen phosphorylase; Function of strongly homologous gene; enzyme.
  
 0.574
CCH88689.1
4-alpha-glucanotransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.537
CCH87528.1
Alpha amylase; Function of strongly homologous gene; enzyme.
 
  
0.502
treS
Trehalose synthase (Maltose alpha-D-glucosyltransferase); Function of strongly homologous gene; enzyme.
 
  
 
0.475
CCH90893.1
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 
 0.469
treS-2
Trehalose synthase; Function of strongly homologous gene; enzyme.
 
  
 
0.466
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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