STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86920.1RNA polymerase sigma factor, ECF subfamily; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. (405 aa)    
Predicted Functional Partners:
CCH86919.1
Homologs of previously reported genes of unknown function.
     0.957
CCH88201.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.782
CCH89247.1
Homologs of previously reported genes of unknown function.
 
     0.781
CCH86917.1
Dihydrolipoyl dehydrogenase; Function of strongly homologous gene; enzyme.
       0.543
nadK
NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
       0.543
CCH86921.1
Homologs of previously reported genes of unknown function.
       0.541
CCH86916.1
Flavin-dependent reductase; Function of strongly homologous gene; enzyme.
       0.409
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.