CCH86923.1 protein (Modestobacter marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH86923.1

Lipolytic protein G-D-S-L family. (276 aa)

Predicted Functional Partners:

mgtA

0.899

CCH90467.1

0.652

CCH86819.1

0.629

CCH86924.1

0.558

CCH86922.1

0.517

CCH89004.1

0.470

CCH89317.1

0.468

CCH86820.1

0.447

CCH90604.1

0.447

CCH87271.1

0.434

Your Current Organism:

Modestobacter marinus

NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH86819.1	CCH86820.1	MODMU_1370	MODMU_1371	Homologs of previously reported genes of unknown function.	Oxidoreductase; Function of strongly homologous gene; enzyme.	0.909
CCH86819.1	CCH86923.1	MODMU_1370	MODMU_1474	Homologs of previously reported genes of unknown function.	Lipolytic protein G-D-S-L family.	0.629
CCH86820.1	CCH86819.1	MODMU_1371	MODMU_1370	Oxidoreductase; Function of strongly homologous gene; enzyme.	Homologs of previously reported genes of unknown function.	0.909
CCH86820.1	CCH86923.1	MODMU_1371	MODMU_1474	Oxidoreductase; Function of strongly homologous gene; enzyme.	Lipolytic protein G-D-S-L family.	0.447
CCH86922.1	CCH86923.1	MODMU_1473	MODMU_1474	Transglutaminase domain protein; Function of strongly homologous gene; enzyme.	Lipolytic protein G-D-S-L family.	0.517
CCH86923.1	CCH86819.1	MODMU_1474	MODMU_1370	Lipolytic protein G-D-S-L family.	Homologs of previously reported genes of unknown function.	0.629
CCH86923.1	CCH86820.1	MODMU_1474	MODMU_1371	Lipolytic protein G-D-S-L family.	Oxidoreductase; Function of strongly homologous gene; enzyme.	0.447
CCH86923.1	CCH86922.1	MODMU_1474	MODMU_1473	Lipolytic protein G-D-S-L family.	Transglutaminase domain protein; Function of strongly homologous gene; enzyme.	0.517
CCH86923.1	CCH86924.1	MODMU_1474	MODMU_1475	Lipolytic protein G-D-S-L family.	Homologs of previously reported genes of unknown function.	0.558
CCH86923.1	CCH87271.1	MODMU_1474	MODMU_1834	Lipolytic protein G-D-S-L family.	Transcriptional regulator, ArsR family; Function of strongly homologous gene; regulator.	0.434
CCH86923.1	CCH89004.1	MODMU_1474	MODMU_3594	Lipolytic protein G-D-S-L family.	Homologs of previously reported genes of unknown function.	0.470
CCH86923.1	CCH89317.1	MODMU_1474	MODMU_3914	Lipolytic protein G-D-S-L family.	3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Function of strongly homologous gene; enzyme.	0.468
CCH86923.1	CCH90467.1	MODMU_1474	MODMU_5088	Lipolytic protein G-D-S-L family.	DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains; Function of strongly homologous gene; enzyme.	0.652
CCH86923.1	CCH90604.1	MODMU_1474	MODMU_5228	Lipolytic protein G-D-S-L family.	Two component signal transduction tyrosine/serine phosphatase; Function of strongly homologous gene; enzyme.	0.447
CCH86923.1	mgtA	MODMU_1474	MODMU_5433	Lipolytic protein G-D-S-L family.	GDP-mannose-dependent alpha-mannosyltransferase; Function of strongly homologous gene; enzyme.	0.899
CCH86924.1	CCH86923.1	MODMU_1475	MODMU_1474	Homologs of previously reported genes of unknown function.	Lipolytic protein G-D-S-L family.	0.558
CCH87271.1	CCH86923.1	MODMU_1834	MODMU_1474	Transcriptional regulator, ArsR family; Function of strongly homologous gene; regulator.	Lipolytic protein G-D-S-L family.	0.434
CCH89004.1	CCH86923.1	MODMU_3594	MODMU_1474	Homologs of previously reported genes of unknown function.	Lipolytic protein G-D-S-L family.	0.470
CCH89317.1	CCH86923.1	MODMU_3914	MODMU_1474	3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Function of strongly homologous gene; enzyme.	Lipolytic protein G-D-S-L family.	0.468
CCH89317.1	CCH90467.1	MODMU_3914	MODMU_5088	3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Function of strongly homologous gene; enzyme.	DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains; Function of strongly homologous gene; enzyme.	0.536