Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86971.1Homologs of previously reported genes of unknown function. (157 aa)    
Predicted Functional Partners:
CCH88229.1
Homologs of previously reported genes of unknown function.
 
     0.733
CCH88212.1
Homologs of previously reported genes of unknown function.
 
     0.732
CCH89024.1
Integral membrane protein of unknown function (modular protein); No homology to any previously reported sequences.
 
     0.714
CCH88244.1
Putative Integral membrane permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.583
CCH86972.1
Putative Sulphate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
     0.542
CCH86970.1
Homologs of previously reported genes of unknown function.
 
     0.533
CCH86969.1
Sulfate transporter; Function of strongly homologous gene; structure.
 
     0.507
CCH88217.1
Putative voltage-gated potassium channel; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.461
CCH86973.1
Homologs of previously reported genes of unknown function.
 
     0.449
CCH89350.1
Homologs of previously reported genes of unknown function.
 
     0.435
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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