STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86981.1Putative thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (134 aa)    
Predicted Functional Partners:
gdh
Glutamate dehydrogenase (NAD); Function of strongly homologous gene; enzyme.
 
    0.721
fabD-2
Malonyl CoA-acyl carrier protein transacylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.685
CCH88812.1
Acyl-CoA thioesterase; Function of strongly homologous gene; enzyme.
     
 0.529
CCH86980.1
Homologs of previously reported genes of unknown function.
       0.517
fabD
Acyl-carrier-protein S-malonyltransferase; Function of strongly homologous gene; enzyme.
  
 
 0.498
CCH90320.1
Acyl dehydratase; Function of strongly homologous gene; enzyme.
 
   
 0.493
acpP
Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
 
 0.491
CCH90321.1
Acyl dehydratase; Function of strongly homologous gene; enzyme; Belongs to the UPF0336 family.
 
   
 0.465
accC
Carbamoyl-phosphate synthase L chain ATP-binding protein; Function of strongly homologous gene; enzyme.
  
 
 0.456
CCH87283.1
Putative transcriptional regulator, PucR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.451
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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