STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87011.1Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein. (552 aa)    
Predicted Functional Partners:
CCH87012.1
RNA polymerase, sigma subunit, ECF family; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.585
CCH90059.1
Homologs of previously reported genes of unknown function.
  
    0.537
CCH87014.1
Bifunctional deaminase-reductase; Function of strongly homologous gene; enzyme.
       0.510
CCH87013.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Function of strongly homologous gene; cell process.
       0.506
gyrA
DNA gyrase subunit A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.498
CCH89294.1
Peptidoglycan-binding lysin domain protein (modular protein); Function of strongly homologous gene; cell process.
  
    0.474
CCH87008.1
LuxR family two-component system transcriptional regulator (fragment); Function of strongly homologous gene; regulator.
 
     0.461
CCH87009.1
Two-component system response regulator (fragment); Function of strongly homologous gene; regulator.
       0.425
CCH87010.1
Histidine kinase; Function of strongly homologous gene; enzyme.
       0.425
CCH90479.1
Homologs of previously reported genes of unknown function.
  
     0.404
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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