STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87012.1RNA polymerase, sigma subunit, ECF family; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily. (338 aa)    
Predicted Functional Partners:
CCH87013.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Function of strongly homologous gene; cell process.
  
    0.677
CCH87014.1
Bifunctional deaminase-reductase; Function of strongly homologous gene; enzyme.
       0.675
sigC
RNA polymerase sigma-C factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.610
sigK
RNA polymerase sigma factor, ECF family; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.591
CCH87011.1
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
       0.575
CCH87008.1
LuxR family two-component system transcriptional regulator (fragment); Function of strongly homologous gene; regulator.
 
    0.472
CCH85675.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.435
CCH87010.1
Histidine kinase; Function of strongly homologous gene; enzyme.
 
     0.428
CCH87009.1
Two-component system response regulator (fragment); Function of strongly homologous gene; regulator.
 
    0.426
CCH87799.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.418
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.