STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87029.1Cell wall-associated hydrolase; Function of strongly homologous gene; enzyme. (339 aa)    
Predicted Functional Partners:
ftsX
Cell division protein ftsX homolog; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.685
CCH88602.1
Homologs of previously reported genes of unknown function.
   
 
 0.602
CCH86594.1
Homologs of previously reported genes of unknown function.
 
 
  
 0.548
ftsE
Cell division ATP-binding protein FtsE transporter subunit; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.498
amiC
N-acetylmuramoyl-L-alanine amidase; Function of strongly homologous gene; enzyme.
 
 
 0.412
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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