pspE protein (Modestobacter marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pspE

Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme. (165 aa)

Predicted Functional Partners:

CCH87037.1

0.554

ybeY

0.534

rplU

0.483

rpsQ

0.462

CCH86148.1

0.410

Your Current Organism:

Modestobacter marinus

NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH86148.1	pspE	MODMU_0692	MODMU_1592	Putative PIN domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	0.410
CCH87037.1	pspE	MODMU_1593	MODMU_1592	Exported protein of unknown function; No homology to any previously reported sequences.	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	0.554
pspE	CCH86148.1	MODMU_1592	MODMU_0692	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	Putative PIN domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.	0.410
pspE	CCH87037.1	MODMU_1592	MODMU_1593	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	Exported protein of unknown function; No homology to any previously reported sequences.	0.554
pspE	rplU	MODMU_1592	MODMU_1723	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	Fragment of Ribonuclease, Rne/Rng family (part 2); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.483
pspE	rpsQ	MODMU_1592	MODMU_4910	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.462
pspE	ybeY	MODMU_1592	MODMU_1767	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.534
rplU	pspE	MODMU_1723	MODMU_1592	Fragment of Ribonuclease, Rne/Rng family (part 2); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	0.483
rplU	rpsQ	MODMU_1723	MODMU_4910	Fragment of Ribonuclease, Rne/Rng family (part 2); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.992
rplU	ybeY	MODMU_1723	MODMU_1767	Fragment of Ribonuclease, Rne/Rng family (part 2); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.874
rpsQ	pspE	MODMU_4910	MODMU_1592	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	0.462
rpsQ	rplU	MODMU_4910	MODMU_1723	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Fragment of Ribonuclease, Rne/Rng family (part 2); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rpsQ	ybeY	MODMU_4910	MODMU_1767	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.876
ybeY	pspE	MODMU_1767	MODMU_1592	Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.	0.534
ybeY	rplU	MODMU_1767	MODMU_1723	Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	Fragment of Ribonuclease, Rne/Rng family (part 2); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.874
ybeY	rpsQ	MODMU_1767	MODMU_4910	Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.876