STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87043.1Copper resistance D protein (fragment); Function of strongly homologous gene; transporter. (358 aa)    
Predicted Functional Partners:
CCH85718.1
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein; Function of strongly homologous gene; enzyme.
   
 0.954
CCH87373.1
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein; Function of strongly homologous gene; enzyme.
   
 0.953
copC
Copper resistance protein; Function of strongly homologous gene; transporter.
  
  
 0.787
CCH86734.1
Homologs of previously reported genes of unknown function.
  
  
 0.676
CCH87390.1
Homologs of previously reported genes of unknown function.
  
  
 0.676
uvrD-2
DNA/RNA helicase, superfamily I; Function of strongly homologous gene; enzyme; Belongs to the helicase family. UvrD subfamily.
  
     0.547
CCH87042.1
Putative Glycosyl hydrolase, BNR repeat-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.539
tatB
Twin-arginine translocation protein, TatB subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
     0.505
CCH90367.1
ResB protein required for cytochrome c biosynthesis; Function of strongly homologous gene; cell process.
  
    0.452
CCH88291.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; factor.
  
     0.424
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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