STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmFCytochrome c-type biogenesis protein CcmF; Function of strongly homologous gene; cell process. (640 aa)    
Predicted Functional Partners:
ccmH
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
 
  
 0.983
ccmE
Cytochrome c-type biogenesis protein ccmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.964
CCH87044.1
Thioredoxin of cytochrome c-type biogenesis; Function of strongly homologous gene; cell process.
  
 0.916
ccmB
Cytochrome c-type biogenesis protein; Function of strongly homologous gene; factor.
 
  
 0.916
CCH87049.1
Cytochrome c assembly protein; Function of strongly homologous gene; cell process.
 
  
 0.905
CCH86773.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
 
 0.773
ccmA
Cytochrome c biogenesis ATP-binding export protein ccmA; Function of strongly homologous gene; transporter.
 
   
 0.677
CCH87034.1
Thioredoxin; Function of strongly homologous gene; enzyme.
 
  
 0.656
CCH87086.1
Putative Redoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
  
 0.651
CCH87370.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant; Function of strongly homologous gene; enzyme.
  
 0.618
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.