STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87059.1Homologs of previously reported genes of unknown function. (135 aa)    
Predicted Functional Partners:
katA
Manganese-containing catalase; Function of strongly homologous gene; enzyme.
 
     0.549
csoR
Copper-sensing transcriptional repressor csoR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
     
 0.484
ysnB
Phosphoesterase; Function of strongly homologous gene; enzyme.
  
     0.472
CCH86602.1
Homologs of previously reported genes of unknown function.
  
     0.452
cypC
Cytochrome P450; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.448
CCH87061.1
Copper chaperone (modular protein); Function of strongly homologous gene; structure.
     
 0.440
CCH88677.1
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; Function of strongly homologous gene; enzyme.
  
     0.413
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.