Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCH87117.1Flp pilus assembly protein, ATPase CpaF; Function of strongly homologous gene; cell process. (461 aa)    
Predicted Functional Partners:
CCH87118.1
Type II secretion system F domain protein; Function of strongly homologous gene; cell process.
 
 
 0.951
CCH87119.1
Flp pilus assembly protein TadC; Function of strongly homologous gene; cell process.
 
 
 0.949
CCH87116.1
Homologs of previously reported genes of unknown function.
 
 
 0.915
CCH86775.1
Flp pilus assembly protein TadC; Function of homologous gene experimentally demonstrated in an other organism; cell process.
 
 
 0.911
CCH86776.1
Type II secretion system F domain protein; Function of strongly homologous gene; cell process.
 
 
 0.906
CCH87115.1
Homologs of previously reported genes of unknown function.
 
 
  0.868
CCH86666.1
Type II secretion system F protein; Function of strongly homologous gene; cell process.
 
 
 0.858
CCH87114.1
Homologs of previously reported genes of unknown function.
 
     0.837
CCH87121.1
TadE-like protein; Function of strongly homologous gene; cell process.
 
    0.773
CCH89222.1
Flp pilus assembly protein TadB; Function of strongly homologous gene; cell process.
 
 
 0.768
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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