Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87150.1Homologs of previously reported genes of unknown function. (354 aa)    
Predicted Functional Partners:
CCH86537.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.706
cbs
Cystathionine beta-synthase; Function of strongly homologous gene; enzyme.
    
  0.643
CCH89894.1
Homologs of previously reported genes of unknown function.
  
     0.638
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.616
CCH90867.1
HNH endonuclease; Function of strongly homologous gene; enzyme.
 
     0.605
CCH85788.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.604
CCH88758.1
Homologs of previously reported genes of unknown function.
  
     0.602
CCH90919.1
HNH endonuclease.
 
     0.580
CCH85792.1
Putative PE-PGRS family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.572
CCH87299.1
Homologs of previously reported genes of unknown function.
  
     0.553
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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