STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87158.1Fe-S oxidoreductase (fragment); Function of strongly homologous gene; enzyme. (641 aa)    
Predicted Functional Partners:
CCH87159.1
Homologs of previously reported genes of unknown function.
    0.995
ndk
Nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase); Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.714
CCH89952.1
Homologs of previously reported genes of unknown function.
  
     0.700
CCH87840.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.543
CCH87969.1
Polyphosphate kinase 2 (fragment); Function of strongly homologous gene; enzyme.
   
    0.543
CCH90629.1
Homologs of previously reported genes of unknown function.
   
    0.543
CCH90808.1
Homologs of previously reported genes of unknown function.
   
    0.543
hemN
Oxygen-independent coproporphyrinogen-III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.490
CCH87155.1
Clp domain protein; Function of strongly homologous gene; enzyme.
  
    0.454
CCH87156.1
Homologs of previously reported genes of unknown function.
       0.447
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.