STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenophosphate synthase; Synthesizes selenophosphate from selenide and ATP. (335 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.997
selB
Selenocysteine-specific translation elongation factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
   
 0.967
iscS
Cysteine desulfurase; Function of strongly homologous gene; enzyme.
    
 0.920
trxB
Two component thioredoxin reductase carring response regulator; Function of strongly homologous gene; enzyme.
    
 0.910
CCH86704.1
Thioredoxin-disulfide reductase; Function of strongly homologous gene; enzyme.
     
 0.907
trxB-2
Thioredoxin reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.907
sufS
Cysteine desulfurase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
 0.907
CCH89434.1
Thioredoxin reductase (NADPH); Function of strongly homologous gene; enzyme.
     
 0.907
trxB-3
Thioredoxin reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.907
fdhA2
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.838
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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