STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87194.1ABC transporter; Function of strongly homologous gene; transporter. (248 aa)    
Predicted Functional Partners:
CCH87193.1
ABC transporter, ATP-binding; Function of strongly homologous gene; transporter.
 
     0.944
CCH87196.1
Two-component system, NarL family, response regulator DesR; Function of strongly homologous gene; regulator.
     0.859
CCH87195.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; regulator.
 
    0.845
CCH88972.1
Two component histidine kinase dimerization and phosphoacceptor region; Function of strongly homologous gene; enzyme.
 
    0.567
recQ-2
ATP-dependent DNA helicase RecQ; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.543
CCH88835.1
Nitroreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
  
 0.531
CCH88973.1
Two-component system, NarL family, response regulator DesR; Function of strongly homologous gene; regulator.
     0.501
appA
ABC-type dipeptide transport system; Function of strongly homologous gene; transporter.
  
  
  0.456
CCH90774.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
  
  
  0.441
CCH87801.1
Putative ABC transport system ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.434
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.