Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87226.1Homologs of previously reported genes of unknown function. (70 aa)    
Predicted Functional Partners:
SsgA
Sporulation and cell division protein, SsgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
  
     0.664
CCH90045.1
Homologs of previously reported genes of unknown function.
 
    0.515
CCH88740.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
  
     0.508
CCH87227.1
Homologs of previously reported genes of unknown function.
 
    0.493
CCH90126.1
Homologs of previously reported genes of unknown function.
  
    0.450
CCH85705.1
Homologs of previously reported genes of unknown function.
 
    0.440
CCH90800.1
Putative Anti-sigma-B factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the anti-sigma-factor antagonist family.
  
    0.434
CCH88856.1
Homologs of previously reported genes of unknown function.
  
     0.427
CCH87088.1
Homologs of previously reported genes of unknown function.
  
     0.412
CCH90602.1
Transcriptional regulator, CdaR family; Function of strongly homologous gene; regulator.
  
     0.407
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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