STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fmdAAcetamidase/formamidase; Function of strongly homologous gene; enzyme. (340 aa)    
Predicted Functional Partners:
CCH87247.1
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.871
CCH87248.1
Putative regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.691
CCH87249.1
Transcriptional regulator, MarR family; Function of strongly homologous gene; regulator.
 
     0.599
fdhA2
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.574
fmdA-2
Formamidase (formamide amidohydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 
0.548
CCH89820.1
Acylphosphatase; Function of strongly homologous gene; enzyme.
     
  0.444
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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