Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH87248.1Putative regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (347 aa)    
Predicted Functional Partners:
CCH87787.1
ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.962
CCH87788.1
ABC transporter, permease protein; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.959
CCH87249.1
Transcriptional regulator, MarR family; Function of strongly homologous gene; regulator.
 
     0.921
CCH85831.1
High-affinity branched-chain amino acid ABC transporter, ATP binding protein (modular protein); Function of strongly homologous gene; enzyme.
  
 
 0.920
ureC
Urease alpha subunit (Urea amidohydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.742
CCH88265.1
ABC-type branched-chain amino acid transport system, permease component; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.735
ureB
Urease beta subunit (modular protein); Function of strongly homologous gene; enzyme.
 
   
 0.717
braE
ABC-type branched-chain amino acid transport system, permease component; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.712
CCH85993.1
ABC-type branched-chain amino acid transport system, permease component; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.706
MODMU_2354
Fragment of putative modular protein: ATP-binding protein (ABC transporter component)(N-terminal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.706
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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