STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87256.1AMP-dependent synthetase and ligase (fragment); Function of strongly homologous gene; enzyme. (668 aa)    
Predicted Functional Partners:
fadD
Long chain acyl-CoA synthetase (AMP-forming); Function of strongly homologous gene; enzyme.
 
0.949
CCH89609.1
Putative fatty-acid--CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
0.949
CCH86712.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase; Function of strongly homologous gene; enzyme.
 
0.934
4CL
Long-chain-fatty-acid--CoA ligase; Function of strongly homologous gene; enzyme.
 
0.920
CCH88369.1
Putative CoA synthetase, long-chain fatty acid:CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.901
CCH88543.1
Short-chain dehydrogenase/reductase; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
  
 0.863
CCH89581.1
Putative fatty-acid--CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
0.841
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Function of strongly homologous gene; enzyme.
 
 
  
 0.762
CCH90400.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
  
 0.692
CCH89317.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Function of strongly homologous gene; enzyme.
  
 
 0.624
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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