STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87271.1Transcriptional regulator, ArsR family; Function of strongly homologous gene; regulator. (189 aa)    
Predicted Functional Partners:
CCH87272.1
Major facilitator superfamily MFS_1; Function of strongly homologous gene; transporter.
 
     0.829
CCH87273.1
Homologs of previously reported genes of unknown function.
       0.539
parA
Chromosome partitioning protein parA; Function of strongly homologous gene; cell process.
       0.539
CCH87270.1
Ribonuclease II; Function of strongly homologous gene; enzyme.
       0.528
CCH89687.1
Major facilitator superfamily permease; Function of strongly homologous gene; transporter.
 
     0.498
CCH89098.1
Transcriptional regulator, MarR family; Function of strongly homologous gene; factor.
  
     0.461
CCH86923.1
Lipolytic protein G-D-S-L family.
  
     0.434
CCH87269.1
Homologs of previously reported genes of unknown function.
     
 0.428
CCH86905.1
Homologs of previously reported genes of unknown function.
  
     0.427
CCH85773.1
Homologs of previously reported genes of unknown function.
  
     0.426
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.