STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87300.1ABC transporter; Function of strongly homologous gene; transporter. (1254 aa)    
Predicted Functional Partners:
CCH87299.1
Homologs of previously reported genes of unknown function.
 
     0.630
CCH87301.1
HNH endonuclease; Function of strongly homologous gene; enzyme.
       0.551
CCH89905.1
Homologs of previously reported genes of unknown function.
  
    0.545
CCH90490.1
Homologs of previously reported genes of unknown function.
 
     0.510
CCH90409.1
Homologs of previously reported genes of unknown function.
  
     0.503
dnaK
Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70); Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.464
CCH88002.1
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.451
CCH90015.1
Homologs of previously reported genes of unknown function.
 
 
   0.410
CCH86599.1
Cell division initiation protein DivIVA; Function of strongly homologous gene; cell process.
  
     0.400
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.