STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87300.1ABC transporter; Function of strongly homologous gene; transporter. (1254 aa)    
Predicted Functional Partners:
cydD
Fused cysteine transporter subunits of ABC superfamily: membrane component; Function of strongly homologous gene; enzyme.
  
 
  0.670
CCH87299.1
Homologs of previously reported genes of unknown function.
 
     0.629
CCH87301.1
HNH endonuclease; Function of strongly homologous gene; enzyme.
       0.551
CCH89905.1
Homologs of previously reported genes of unknown function.
  
    0.546
CCH90490.1
Homologs of previously reported genes of unknown function.
 
   
 0.517
CCH90409.1
Homologs of previously reported genes of unknown function.
  
     0.503
dnaK
Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70); Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.460
CCH88002.1
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.451
acuC
Acetoin dehydrogenase; Function of strongly homologous gene; enzyme.
   
 0.444
CCH90015.1
Homologs of previously reported genes of unknown function.
 
 
   0.406
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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