Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87304.1Protein of unknown function; No homology to any previously reported sequences. (90 aa)    
Predicted Functional Partners:
CCH87305.1
Na+:solute symporter; Function of strongly homologous gene; transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
   
 0.952
CCH87306.1
Na+:solute symporter; Function of strongly homologous gene; transporter.
 
   
 0.952
CCH87303.1
Homologs of previously reported genes of unknown function.
       0.614
gpmB
Phosphoglycerate mutase; Function of strongly homologous gene; enzyme.
       0.558
CCH87307.1
Homologs of previously reported genes of unknown function.
       0.555
CCH88856.1
Homologs of previously reported genes of unknown function.
  
     0.523
CCH90039.1
Homologs of previously reported genes of unknown function.
  
     0.509
CCH86600.1
Polyketide cyclase; Function of strongly homologous gene; enzyme.
  
     0.460
CCH87750.1
Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.428
plsC-4
1-acylglycerol-3-phosphate O-acyltransferase; Function of strongly homologous gene; enzyme.
  
     0.427
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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