STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87325.1Homologs of previously reported genes of unknown function. (375 aa)    
Predicted Functional Partners:
chaB
Cation transport regulator chaB; Function of strongly homologous gene; regulator.
 
     0.730
CCH89641.1
Protein of unknown function; No homology to any previously reported sequences.
  
 
   0.692
CCH87326.1
Homologs of previously reported genes of unknown function.
       0.647
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.613
CCH90928.1
Protein of unknown function; No homology to any previously reported sequences.
  
    0.573
rplW
50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
   
  0.530
rpmD
50S ribosomal protein L30; Function of homologous gene experimentally demonstrated in an other organism; structure.
   
 0.529
CCH87327.1
Homologs of previously reported genes of unknown function.
       0.523
CCH87324.1
Homologs of previously reported genes of unknown function.
       0.517
gloA
Lactoylglutathione lyase family protein; Function of strongly homologous gene; enzyme.
  
     0.496
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.