STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
CCH87376.1Peptidase M23; Function of strongly homologous gene; enzyme. (378 aa)    
Predicted Functional Partners:
CCH89494.1
Putative Transglycosylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.669
ponA
Membrane carboxypeptidase (Penicillin-binding protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
   
 0.660
CCH90939.1
Peptidoglycan glycosyltransferase (Penicillin-binding protein); Function of strongly homologous gene; enzyme.
  
   
 0.589
ftsX
Cell division protein ftsX homolog; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.548
CCH87377.1
Transcriptional regulator, CopY family; Function of strongly homologous gene; factor.
    
  0.525
CCH87869.1
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
  
   
 0.518
relA
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
     0.480
CCH87378.1
Zn-dependent protease; Function of strongly homologous gene; enzyme.
     
 0.476
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
  0.459
CCH86478.1
Lytic murein transglycosylase; Function of strongly homologous gene; enzyme.
  
 0.435
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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