STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87377.1Transcriptional regulator, CopY family; Function of strongly homologous gene; factor. (128 aa)    
Predicted Functional Partners:
CCH87378.1
Zn-dependent protease; Function of strongly homologous gene; enzyme.
 
 
  0.970
CCH89384.1
Membrane protein of unknown function; No homology to any previously reported sequences.
 
 
  0.868
CCH87054.1
Homologs of previously reported genes of unknown function.
 
 
  0.866
CCH87379.1
Blue (Type 1) copper domain protein; Function of strongly homologous gene; carrier.
       0.584
copZ
Copper insertion chaperone and transporter component; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
  
 0.572
CCH87376.1
Peptidase M23; Function of strongly homologous gene; enzyme.
    
  0.525
CCH87061.1
Copper chaperone (modular protein); Function of strongly homologous gene; structure.
  
  
 0.517
cydD
Fused cysteine transporter subunits of ABC superfamily: membrane component; Function of strongly homologous gene; enzyme.
 
     0.416
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.