Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87379.1Blue (Type 1) copper domain protein; Function of strongly homologous gene; carrier. (150 aa)    
Predicted Functional Partners:
CCH86250.1
Multicopper oxidase, type 3; Function of strongly homologous gene; enzyme.
   
 0.888
qcrA
Menaquinol-cytochrome c reductase iron-sulfur subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.587
CCH87377.1
Transcriptional regulator, CopY family; Function of strongly homologous gene; factor.
       0.584
CCH87378.1
Zn-dependent protease; Function of strongly homologous gene; enzyme.
       0.584
CCH87114.1
Homologs of previously reported genes of unknown function.
   
 0.543
CCH88561.1
Homologs of previously reported genes of unknown function.
   
 0.543
CCH89226.1
Homologs of previously reported genes of unknown function.
   
 0.543
qcrB
Menaquinol-cytochrome c reductase cytochrome b subunit; Function of strongly homologous gene; enzyme.
   
 
 0.438
ctaC
Cytochrome c oxidase subunit 2; Function of strongly homologous gene; enzyme.
  
 
 0.436
CCH90648.1
Putative 2-nitropropane dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
  0.435
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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