STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87387.1Homologs of previously reported genes of unknown function. (169 aa)    
Predicted Functional Partners:
CCH88776.1
Homologs of previously reported genes of unknown function.
  
    0.705
CCH90223.1
Monofunctional chorismate mutase; Function of strongly homologous gene; enzyme.
  
     0.700
whiB-4
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.687
CCH88793.1
Protein of unknown function; No homology to any previously reported sequences.
  
    0.665
CCH88923.1
Conserved protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.659
CCH89715.1
Phage shock protein A, PspA; Function of strongly homologous gene; cell process.
  
     0.638
CCH90053.1
Homologs of previously reported genes of unknown function.
  
     0.617
CCH89867.1
Homologs of previously reported genes of unknown function.
  
     0.613
CCH88728.1
Conserved protein of unknown function, putative coiled-coil domain; Homologs of previously reported genes of unknown function.
 
  0.584
rpsZ
30S ribosomal protein S14 type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.574
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.