STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87391.1Homologs of previously reported genes of unknown function. (220 aa)    
Predicted Functional Partners:
copC-2
Copper resistance protein CopC; Function of strongly homologous gene; transporter.
 
     0.855
CCH88948.1
Putative metalloprotease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.708
CCH89772.1
Homologs of previously reported genes of unknown function.
  
     0.693
CCH89344.1
Homologs of previously reported genes of unknown function.
  
     0.691
CCH88923.1
Conserved protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.689
CCH86997.1
Homologs of previously reported genes of unknown function.
  
     0.671
CCH87390.1
Homologs of previously reported genes of unknown function.
       0.644
CCH90235.1
Homologs of previously reported genes of unknown function.
  
     0.632
CCH89867.1
Homologs of previously reported genes of unknown function.
  
     0.620
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.611
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.