Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87394.1Cobalt, cadmium, and zinc/H(+)-K(+) antiporter; Function of strongly homologous gene; transporter. (218 aa)    
Predicted Functional Partners:
CCH87393.1
Transcriptional regulator, ArsR family; Function of strongly homologous gene; regulator.
 
   
 0.818
CCH87391.1
Homologs of previously reported genes of unknown function.
       0.588
copC-2
Copper resistance protein CopC; Function of strongly homologous gene; transporter.
       0.588
CCH87382.1
Transcriptional regulator, ArsR family; Function of strongly homologous gene; regulator.
 
   
 0.566
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
  
    0.521
CCH87390.1
Homologs of previously reported genes of unknown function.
       0.479
CCH87084.1
Transcriptional regulator, ArsR family; Function of strongly homologous gene; regulator.
 
   
 0.448
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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