STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87399.1ABC transporter; Function of strongly homologous gene; transporter. (310 aa)    
Predicted Functional Partners:
CCH87400.1
Homologs of previously reported genes of unknown function.
  
   0.829
CCH86029.1
ABC sugar transporter ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
  
 
0.812
CCH90833.1
Putative ABC-type transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
  0.669
MODMU_2354
Fragment of putative modular protein: ATP-binding protein (ABC transporter component)(N-terminal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
0.634
ugpC
Glycerol-3-phosphate ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
  
 
0.631
yxjL
Uncharacterized transcriptional regulatory protein yxjL.
       0.531
CCH87398.1
Putative two-component system sensor kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.531
CCH86304.1
ABC efflux pump, inner membrane subunit, DrrB family; Function of strongly homologous gene; transporter.
 
 0.452
cydD
Fused cysteine transporter subunits of ABC superfamily: membrane component; Function of strongly homologous gene; enzyme.
     
  0.406
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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