STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH87412.1Putative translation initiation inhibitor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor. (135 aa)    
Predicted Functional Partners:
pab
Para-aminobenzoate synthase; Function of strongly homologous gene; enzyme.
    
 0.534
CCH87411.1
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
 
     0.531
CCH87413.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.519
kynA
Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
 
     0.510
CCH88969.1
Homologs of previously reported genes of unknown function.
  
     0.468
CCH88972.1
Two component histidine kinase dimerization and phosphoacceptor region; Function of strongly homologous gene; enzyme.
  
    0.430
CCH87887.1
acetyl-CoA carboxylase, biotin carboxylase subunit; Function of strongly homologous gene; enzyme.
 
 
  0.424
CCH89991.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
  
     0.410
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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