STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87431.1Transcriptional regulator, TetR family; Function of strongly homologous gene; factor. (182 aa)    
Predicted Functional Partners:
CCH87432.1
Hydrolase; Function of strongly homologous gene; enzyme.
 
     0.881
msrA
Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.776
CCH87429.1
Excinuclease ABC C subunit domain protein.
       0.448
CCH89913.1
Homologs of previously reported genes of unknown function.
  
     0.448
CCH89146.1
Transcription regulator, TetR family; Function of strongly homologous gene; factor.
  
     0.437
CCH86608.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
     0.436
CCH89934.1
Homologs of previously reported genes of unknown function.
  
     0.409
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.