STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87434.1Transcriptional regulator, liaR family; Function of strongly homologous gene; regulator. (350 aa)    
Predicted Functional Partners:
CCH89240.1
Two component transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
  
     0.576
CCH90236.1
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Function of strongly homologous gene; regulator.
  
     0.564
CCH87433.1
Intracellular protease, PfpI family; Function of strongly homologous gene; enzyme.
       0.558
CCH87209.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; regulator.
 
 
 0.554
CCH85621.1
Two component transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
  
     0.550
CCH88307.1
Two component transcriptional regulator, LuxR family (fragment); Function of strongly homologous gene; regulator.
  
     0.550
CCH85620.1
Two component transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
  
     0.547
rnhB
Fragment of Ribonuclease HII (part 1); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.542
CCH86348.1
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Function of strongly homologous gene; regulator.
  
     0.534
liaS
Two component signal transduction histidine kinase involved in sensing cell wall stress response; Function of strongly homologous gene; enzyme.
 
 
 0.512
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.