STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87451.1Homologs of previously reported genes of unknown function. (190 aa)    
Predicted Functional Partners:
fdh-4
Formaldehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.916
fdh-5
Formaldehyde dehydrogenase; Function of strongly homologous gene; enzyme.
  
     0.698
CCH89732.1
Anti-sigma factor; Function of strongly homologous gene; factor.
  
    0.591
CCH89413.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
     0.507
dehH
Haloacetate dehalogenase H-1; Function of strongly homologous gene; enzyme.
       0.476
CCH86625.1
Putative lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.467
CCH89148.1
Homologs of previously reported genes of unknown function.
  
     0.458
CCH89442.1
Homologs of previously reported genes of unknown function.
  
     0.456
CCH85684.1
Homologs of previously reported genes of unknown function.
  
     0.439
CCH87448.1
Homologs of previously reported genes of unknown function.
 
     0.422
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.