STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87469.1Homologs of previously reported genes of unknown function. (353 aa)    
Predicted Functional Partners:
CCH87471.1
Homologs of previously reported genes of unknown function.
 
     0.821
CCH87470.1
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the sigma-70 factor family.
       0.773
CCH87468.1
Amidohydrolase; Function of strongly homologous gene; enzyme.
       0.615
iaaH
Indoleacetamide hydrolase; Function of strongly homologous gene; enzyme; Belongs to the amidase family.
       0.494
CCH87472.1
DNA binding domain protein, excisionase family; Function of strongly homologous gene; enzyme.
       0.468
CCH87466.1
Aldo-keto reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.453
CCH85876.1
Putative Lipopolysaccharide biosynthesis translocase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.449
CCH87473.1
Homologs of previously reported genes of unknown function.
 
     0.408
CCH87114.1
Homologs of previously reported genes of unknown function.
  
     0.404
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.