STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87472.1DNA binding domain protein, excisionase family; Function of strongly homologous gene; enzyme. (115 aa)    
Predicted Functional Partners:
CCH87277.1
Homologs of previously reported genes of unknown function.
  
     0.531
CCH86048.1
Metallophosphoesterase; Function of strongly homologous gene; enzyme.
  
     0.515
CCH87469.1
Homologs of previously reported genes of unknown function.
       0.468
CCH87470.1
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the sigma-70 factor family.
       0.468
CCH87471.1
Homologs of previously reported genes of unknown function.
       0.468
CCH87473.1
Homologs of previously reported genes of unknown function.
       0.454
CCH87296.1
Homologs of previously reported genes of unknown function.
 
     0.433
CCH90126.1
Homologs of previously reported genes of unknown function.
  
    0.409
CCH86184.1
Homologs of previously reported genes of unknown function.
  
     0.406
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.